Scaffold Ga0307514_10000033

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000033
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 364085
• Total Scaffold Genes: 385
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 133 (34.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F079403	Metagenome	115	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000033206	F019765	GAG	MLQVMDNMEASCVFYVKVGTFTHLEQSKIILLTVNESGIVTLTVQHDLIVSIIFM
Ga0307514_10000033207	F008227	N/A	MDTQPPPPGNSGSNTSRLVGVKSNTEMLGTQHERRQNLVHFNAANAAIKHMTQDTDLKIVCKTGSSKNKKQHAVRCKYIHIEANGSQLTE
Ga0307514_1000003349	F088003	GGTGG	MAIVRTVHEITHHDEVSSGIFADEFSDKHPRQWTKQAFITLEEATEVYIVEVIAEFHC
Ga0307514_1000003350	F008227	N/A	MDTQPPPPGESGWNYGPLAGAPSNMGILGTQQELRYKLVHHDAPNAATKHIFQDAHVKIVCKTGSSKNANQHAVGCEYIHNEVNGCQLTV
Ga0307514_1000003379	F004778	GGA	MLDHFELTNDCLLSITTDNASSNYLITCELQSTLEASGIEWPALRNYIPCMAHVIQLALGAFRSSLGVKGRIKSWEAHECDQQSGENESIDFGKSQRLRKEGNARINKVSAMRPGLGKIIEKVRIFMIFXESXSXPSYSRESLLS
Ga0307514_1000003389	F079403	N/A	MGPQNCHDGKHPDTMIQDFRALLDNTQDGTYCIPIYNGTQECMKHKSRNNMCISHKQLHAMELCIQYDIKVQVEGFDGELISQMXLCTGSQSWREGDRQNNWAXVKQCPGRCYGALNGRLRWQLQQLFKIQPLNIDGAFIEYRLALALSAIPENSGNLDPVSKFVQVRKAIAAAALKVCSIRTIVCCAHLIPEIATSSKTGDGQNERWIVNRHIDLATWNDVYN
Ga0307514_1000003396	F006048	N/A	MLDITRSNRYQVXAQVDKVKSHFIQSARDNIAELYDFHRFEPAAENLEFIDSHLADIKYLFSVAERVEGGVRSPDPMQREMKATNQWPESTSLPGGTNPTVDLHQILLLDE