Scaffold Ga0307514_10000027

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000027
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 387247
• Total Scaffold Genes: 396
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (39.90%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F026456	Metagenome	197	Y
F046750	Metagenome	150	Y
F079540	Metagenome	115	Y
F086388	Metagenome / Metatranscriptome	110	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000027226	F046750	GGA	MIDNKDSHIPSSLIMITCTTLCHALLEWQKNLGVHLTAXKXKLKAGRPEHLNYVNDKNDSGKIKSCCAVTGCKLLTSPAIADLYTFLMNTWNTLPESYQQSVYTNTLAIVKQQIQRVVNSMPAVVNSVEAACVHNSILLDYLTSEVALQEPEIGSTDQNIQIDNNCTDDEMHLGMPAGCADQQDHGDKSDECDAIPTASRRRRTSTELERVHLGTSDVNGYEGEDGEDADPDEEEVAFQGDHXSTQNVED
Ga0307514_10000027227	F006048	N/A	LDITRSIQYQIQVQVDKVQSQFILSARDNIAELYDLHFFESATEHLQFIDSLLADNKYHCPVAERVEGGVHSPNPMQRQSKAANKSLASTLLPGGSNPAVYLHQIVLLGK
Ga0307514_10000027248	F089625	GAG	MIITPLGFATELSLNQAESLPVQSNPDENNYGLQQMMNGQYIKMSVNGGSTICGLVSTVI
Ga0307514_10000027268	F008227	N/A	MHTQPPSRGESGSNTGRLAGATSNTQIVGTQQERRHQLVHRDAANAATKNMTQDAHLNIVCKTGSRKNKKQHAVGCECIHIEAIGGQLTV
Ga0307514_10000027297	F010438	N/A	MTRLVFAMERLMELYMWNTRPFMSASDFEMISYATSRTAKGLAEAPHWQIIENYCNTAMQQNNIWSIAFEACTKEILKEVC
Ga0307514_10000027374	F086388	N/A	METGDKTAEHLEMGAVKESNHTLAADDIDWGVSQIDTLCEWYMVNFYPVIPNCHHCVVVSPTGNQVEPYSLSLVEILWSTCSVKQR
Ga0307514_1000002740	F026456	N/A	MFDHMDGVMRTLASKKTQWKEDLSFTVKLAQQKLSRYYAKVTATMAMLLISAHNLNSFLKLQLFGQWDKRMDVNPENETSHTT
Ga0307514_1000002762	F079540	AGGA	MLGYDQNILIDTIFIKLPNGLLYYGQPFCNPTSVVRLGLDCKVEYTNANQGIMPEAHNIWVQYMQSEENDLDNIFQQRIPSFPILYFSXTPPNQIHQLPEHLPAGIALSMLSKRCKKPQQWVLHPQAQEYTVVIQTKFKDHHGYADCVDGFIQVVKQTNKMHIVPVGAMVGPAHLVRENAASSGIDSVXLVNNHVDVDAYLIVY