Scaffold Ga0307514_10000025

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000025
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 393646
• Total Scaffold Genes: 368
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 135 (36.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F036505	Metagenome	169	Y
F059517	Metagenome	133	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000025116	F008227	N/A	MDTQRPPPGESGTNTGRLVGATANTELLGTQQEHRHKLVHRDAANVATNHMTQDAHLKIVRKTGSSKNKKQHAVGC
Ga0307514_10000025119	F036505	AGG	MSSLGVKGRTMSWEAHERNQQFGEDESVDIGKSQRLXKEGNARINKVSAMRPGLAKIIEKVRISXYFESPEADLHKAVNACCINYANTWSPKRV
Ga0307514_10000025169	F080709	N/A	MVELSTRKREIRGDGGNHHEKLGLERILCASQLTIPDTAGMSPDPAGNITDKGSSKPNQAGHTPDFS
Ga0307514_1000002584	F006048	N/A	MLKKQPILDDTCSIRDQVLAPVDKAKSHFIQSARDHIAQLYDLHRFESDPEHLEFIHSLLADNKSLFLLAEHVAGGVGGPNPTLRVLKAAKEWLASTSLPGGSNPGVDQH
Ga0307514_1000002595	F059517	N/A	MQRPRLDITRSNQHQVHTQVYKVKSHFIQSARDNIAELYDLLHIGSATEHFEFIDSLLADNKYLFAVAECVGGGVRGPKSNAERVESC