Scaffold Ga0307514_10000024

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000024
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 398839
• Total Scaffold Genes: 449
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 297 (66.15%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F038958	Metagenome	164	Y
F046111	Metagenome / Metatranscriptome	151	Y
F048690	Metagenome	147	Y
F088003	Metagenome / Metatranscriptome	109	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000024170	F008227	N/A	MDTQPPPPGESGLNPGRMAGATTYTDIQGIQQEHRQKLVHRDAAGAATKQMTQDAHLKIVRKTGSRRNKRQYAVGCEYIHIDPISSPLTV
Ga0307514_10000024176	F038958	N/A	MTEVVASLLVDVQPSKAKLTLFRIGNCFLIASTVSAYSLQQMILRVVADGRTRSSCNALYDRRSSTFDGAFHGLCAETNPYIRLRLHVSW
Ga0307514_10000024221	F010438	GGAG	MCNRRPLMSASDLETVSYAMLCVGKALPEAPYWQIIETYWNTTMQQNNIWSIAFEAHTKEILKEVC
Ga0307514_10000024222	F004891	GGA	MIARASGFGMGVGRFSRRLRGVEVLAMPDAGLDTTRRVKSVCMVPLGAGVLRLLVPGVAVGVIINSRCVADGVEVTRCVISATREFFSEDEGVEF
Ga0307514_10000024306	F046111	N/A	MNVSSLEHVVIRAKLGDIIGFQIIQITVQEASIQLTIIALAIDIVPTYRNLKRDTSGLGTCTGVHCRR
Ga0307514_10000024355	F010438	GGAG	MWNRRPFMSASDWEMVSYTTQRVAKAFAEAPYWQIIEMYWNTAMQQNNIWFIAFEAHTKDILKEVCLINGPPWL
Ga0307514_10000024369	F004891	N/A	VSVARVRSGFIMIAWASGLGMGVGMFSRPRRGVGVLAMLDAGLDMTPRIKSVCVIPLGSGAVRLLVPGVAVRVIIDRRCVADGVEVTRWVISATRELFSEDVGVEF
Ga0307514_10000024370	F010438	GGAG	MWNRRPFMSASDLETVSCASQRVAKALAESPHREIIEMYWNSAMQQINIWSIASEARTKKISKEVC
Ga0307514_10000024386	F089625	N/A	MITLLGFATGLSLNHAARLPIKSNQDENSYRRQQMSNGQYIEMSVNGASTICGHVNMVFH
Ga0307514_10000024391	F048690	GAG	MLQDMDNMEASRVFYVKFSTFTHLAHSRTTLVTVNQSGMVRLIVRDDLIVSVSFMYYPRNYMRQSSADILSVEQCPIYRYC
Ga0307514_10000024399	F088003	N/A	MERHDVVTSGSFADEFPEKHLREWTEQALITLEEATQAYMVKVTAASQCLKQ
Ga0307514_10000024449	F046111	N/A	VKYDVVMDVSLLEYVVIRPKLGDIIAFQKIQIAAQKASFQLTIIALAIKIVPTYRDLQSYTSGLGTCTVGIL