Scaffold Ga0307514_10000022

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000022
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 401378
• Total Scaffold Genes: 489
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 316 (64.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y
F079414	Metagenome	115	Y
F081952	Metagenome / Metatranscriptome	113	Y
F102183	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000022393	F079414	GGCGG	MNLYQSSAVFTAIPVLYTIAESLLERLLESLLESLLESLLESLFESLLESLLERALHREE
Ga0307514_10000022407	F004891	GGA	MIVRASGLGMGVGRFSRLLRGVRVLAMPDAGLDTTQRVESVCVVPLGAGVLRLLVPGMAVGVIIDHRCIADGAEVTC
Ga0307514_10000022408	F006048	N/A	MHKGDLERGMLKKRPTLDITRSNQYQVRAQVEKVKSHCIQSARDNIAELYDLHRFESDAERLEFIDSLLADYKYLFPVAEHVEAGVRSPNATQRVSKAANEWPASTLLPGGSHRAVYLHQILSSGE
Ga0307514_10000022409	F060560	N/A	VNNRGKYADGFYNSMIDDKDSHRSLPLIMFTCTALRHALLEWQKNKGVHLNASRSKLKVDRPDRLNYFNSKNDGCKNTSCCAATGRKSLTSPGVADTYTFLMNTWNTLPESYQQRVYNNTLATVKHQIQQAENPTPAVVISVEAARVGNAILLNYLATKVALEEPEIGSTDSDIPIDNNCTDDELHFGIPGGSGD
Ga0307514_10000022420	F051592	GAG	VRLHEVENPLLQVVKHADQHCMEQVRLREVAHDTRNMLKHFESSVKMARQEFCIGCLGIRIGECSI
Ga0307514_10000022429	F004891	GGAG	MIAPASALAMRVGRFSKPQRGVGVTPMPDAGLNITQHIEVPSGAGVLRLLVSGVAVEVSIDCHCVADGVEVTH
Ga0307514_10000022469	F081952	AGG	MVNDPKWNLSPHPAGKYDKSSKKTTRPRHQANEGKSSVEAEMVQALGALPSLRLKKKVVVEK
Ga0307514_1000002263	F102183	AGG	VLKKPKISLPMSLVFAEEKCSQALLDFLFHTDVGRISGVVEEAENSDHEESSDGGCKS