Scaffold Ga0307514_10000021

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000021
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 407852
• Total Scaffold Genes: 422
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 160 (37.91%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F026456	Metagenome	197	Y
F078047	Metagenome / Metatranscriptome	116	Y
F079540	Metagenome	115	Y
F081952	Metagenome / Metatranscriptome	113	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000021102	F004778	AGG	MGARLADHLNEVLDHFVKTNGCVLRITTDYTSSNYSMTRELQTTLEASGILCPLLRNHMPCMAKVIQLALGAFMSSLRVNGRTKYWEAHERDQQFGQNESTNIGKSERLRKEGNARIN
Ga0307514_10000021145	F079540	AGG	LTAKVFNLLSATDKRQSIRRAHLLHLQTIQNEPIICPVSQQVYQLSEIHVSGVCRSVKLTSQRDASEDFGIPNFGQLFRAQIEEDWAHKVNGLVLEYDQNVLTDSLFITLQNGLLYYCQPFHCPTSVERLGLDCKVEYIHANQGTMHEAHNIWVQYMQSEENDLDNTFQGQISSLPVFYLSWTPLNQMLQFQESLPARKPISTFFERCKKTEQWVLRPQVQEYAVVIPTKFKELHGWAECIDGFIWIVEQTNKMHIVRVGAIVGPAHLVRENATVGAIDSVWLLHNYVNLDTNWTAY
Ga0307514_10000021195	F006048	AGAAG	MLKQWPTLDITRSNWYPVCAQVDKVKSHFIQSARDNLAELYDLHCIESDAERLEFIDSLLADNKYLFPVAERVEGGVHSPNATQRVSKADNEWPASTLLPGRRYPAGYLHEILSLSE
Ga0307514_10000021212	F008531	GGA	MAHITQLALGAFKCSLGVKGCTKSWEAHECDHQFGENESIDIGKSPRLGKEGNARINEVSAMRPGLAEIIEKVLKLIFI
Ga0307514_10000021229	F008531	GGA	MAHVIQLALGTFMSSLRVKCCTKSSEAHEQDQGFGEHETIAIGKYQTLRKEGNPRINKVSAMRSGLAKIIQKVCIS
Ga0307514_1000002124	F078047	N/A	VGGYFPGTSDGGRMGDYLEFFGEVLGLILVFCLFDYYITHIDA
Ga0307514_10000021266	F026456	N/A	MSDHMDGVMRVLAEKKTQRKEDLYFAVKVAPQKLSKAFTQVTSMTGLHVISAHILDPFRELESFRKWDMVIYIKPEDESSYSA
Ga0307514_10000021385	F026456	N/A	MDAITRALAKKKTQWMEDLYFAIKVARQKLSKYCTEVTPTTGLLLIAAHIHDPFRKLWSSRKWDKGMDINSGEETSYTTQYQEAILKHVETQ
Ga0307514_10000021391	F088003	N/A	MAFIRTVHEIKHHDVYSSGIFADEFPNKHPLQWTKKAIIALEEATEAYMVEVTAEFHC
Ga0307514_10000021392	F008227	N/A	LDTQTPPPGKSGSNAGRLAGAQSNMEILGTQQERRHKLVHCDAANAATKYMTQDAHLNIFRKTGSSKNMKQHAVGCEYIHIEANGSQLTV
Ga0307514_10000021402	F081952	N/A	MVNARKKNFSPLPAGNYRNSTKRSTRRHHQANDGESGSDADRVRALQALHSLGSKKKLAAEKLQEMHILSNEDKDKWIEDYVETETAGARQQVVDAEETIGQE