Scaffold Ga0307514_10000020

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000020
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 411431
• Total Scaffold Genes: 407
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 151 (37.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F016905	Metagenome / Metatranscriptome	243	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y
F088003	Metagenome / Metatranscriptome	109	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000020162	F016905	GAG	MPRHRYTPAEYALSKVVESFGYLLFALAEHHLTHTDAVVFRFCKLENIDYLVLRYLNPGASPFEEYSEEWLDDAEV
Ga0307514_1000002024	F038958	N/A	MTDIMATLFVDVQLSKAKLTLFRIGNGFLIPSTVSAYSLRQMLLRVVADSRTRSLRTALYDLRSSXCDIVFSGICVETISNMR
Ga0307514_10000020246	F026456	N/A	MFNHMDGVMRFLAKKKTKWNEDLFFVAKLAQQKLSKYYAEVTPTMGMHLISAHILDSFWKLRSFRKWDKGMDINPEDKTSYKTQY
Ga0307514_1000002027	F008227	N/A	MDTQPPLPGESGSNTGRLAVVTTNMDILGTQQERRQKLDHRDTVNAATKHMTQDAHFKIVHKTGSIRNKKQHVVGCKYIHIDAISXQLIV
Ga0307514_1000002028	F088003	AGG	MVREIEHHDVVSAGIFADEFPDMRPWEWTKQALITLEEATEAYMVEITAEYHX
Ga0307514_10000020356	F089625	N/A	MITLGFATGLSLDQAESQPVQSYQDENNYRQQQMMNGQYIKMSVIRGSMIWGLVSMVIHQSLGRCYA
Ga0307514_10000020360	F089625	N/A	MMLLGFATGLSLKQGESQPVKSNQDENNYRWQQMLLGEYIKMSINGASIICGLVSTVIHQ
Ga0307514_10000020375	F008227	N/A	MDTQPPPAGQSGSNTDRLAGATSNMELLGTQQERRHKLVHHDAANVATKHMTQEAHFKIVRKTGSSKNEKQHAVGCEYILIVANSGLLAV