Scaffold Ga0307514_10000014

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000014
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 459447
• Total Scaffold Genes: 485
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (37.11%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y
F060560	Metagenome	132	Y
F079403	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000014158	F060560	N/A	MINNKDGHIPLPPIMFTCTALRHATLEWQKNKGVYPKASKSKLKADRPDRLNIFNHKNDGGKIASCCTVMGRKFFTSPGVADTYRFLMNTWNTLPESYQWRVYNNTLATVKRQIQQAENPTPAVVLSMEAARVDNAIHLDYSASEVALEEP
Ga0307514_10000014176	F079403	GGA	MLRRQGXEGMGPLLXYNLSXSSHDSPHFTIPDDVAAPQGDEKDPHAMIKDFRALLDYTQDTMHRLPIYSGTRELIKHKSRNKTYISDEQLHTMELCIYHGIKVQVEGLDDERISQMCRCTGSQSWHGGDQRNDWVWVKQRPGRCYGALNGRLPWQLQQLFKIKLQNEDGAFVEYWLALALTAIPENSGNFDPVSKFVQVRKALAAVALQVFSLGNIVGCGHVIAEIATSSKTGDGRNERRIVNSHIDPATWNDVYNY
Ga0307514_10000014282	F019765	GAG	MLQVMENIEASCIFSVKVGTFTHLEQTEISLLMVNKSGMDKLTVQHELIVSVSFM
Ga0307514_10000014436	F004778	N/A	VLDCFELTKGRLLGITTDSASSNYSMTRELQSTLEVSGIEWPAFRNHILCRAQVMQLALGAFMSSLGVKDRTKSWEAHEGDQQFGENESIDVGKSQRLPKEGNARINKVSAMKAGLGKIIGKVHIS
Ga0307514_10000014476	F026456	N/A	MFNPMDGVMRALGKKKTQCKEDLYFAVKLGRLKLSIYYAEGTPMTGMLLISAHILDSFRKLRLFRKWDKGMAINP
Ga0307514_1000001463	F008227	N/A	MMDMQPPLPGESRSHQGGLAGAITNTEILGTQRERSHQLVHRDAANAATKLMMQNAHLHIVRNTGSSKNEMQHAV
Ga0307514_1000001467	F026456	N/A	MIDHMDGVMQPLAKKKTQWKEDMIFTVKLARQKLSKIYAEVTPSTGMLLIVGIILDPFRKLQSFRK
Ga0307514_1000001472	F038958	GAG	MMDIIVDLFVDVHPSKATLTLFLDGNCFVIVSTVCVYSLLQILRKMLADGNTNXVRNALYDCRSLWFDIAFHELXAKTNHHIR