Scaffold Ga0307514_10000009

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000009
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 519472
• Total Scaffold Genes: 599
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 396 (66.11%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F019765	Metagenome	227	Y
F026456	Metagenome	197	Y
F036505	Metagenome	169	Y
F038958	Metagenome	164	Y
F062316	Metagenome	130	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000009221	F019765	GAG	MLQVMDNMEASCVFYFKVGTFTHLEQCKITLMTVNKMGIVKLTVQHDLIVSISFM
Ga0307514_10000009232	F004778	GGA	VGQHTRAILARYSKDMCDYFELGNSRLHAISTDNASSNYSMTRKLQLTLDAPRIEWPSLRNPIPCMVHVIQLALGAFMTSLGVNGRTKSWEADERDQQFRYTKSIDIGKSQRLSREGNARVNKVSAMRPDLAMIIEKVRILTYFESPETDL
Ga0307514_10000009239	F062316	N/A	LNAFDSIEIILTATFKEEPLEAYFCEQSTVPSPWNTYWTDAAREVGGLDINDPVFGPHWTRYSGAHSSFPCDHEEPCDCEELNCVGTHSTVGHAAAVATTAKSLGIPLIVIVPPTPNSSEIDAYNWHW
Ga0307514_10000009241	F092994	AGGA	MDPSAGRRRISAEERAKRFADGRCLYCGGFNHRAAECAARMKAETFKAAGEEIDEVGTKEGSEESAKD
Ga0307514_10000009269	F036505	GAGG	MKWPTLKNHIPCMAPVIQLASCVFMNSLGVQCRTKSWEAHKRNQQFEKNESTDIGKSQRLRNESNARINNASAMRPGLAKILEKVRISTYSESPETDLHMVENASCIDYADTWSSKQVH
Ga0307514_10000009291	F038958	N/A	MTDLMASLFVDVHPSKAELTLFLEGNCVLIAFTVSVYFLQQMLLSMLVDGSTNSLCNGLYDCPSSKFDIPFPGI
Ga0307514_10000009292	F036505	N/A	MTQVIQLALAAFISSLHVKARTKSWEAHQCDQQFGEYESIDVGKTQRLPKEGNTRINKVPAMTPGLVKIIAKVRISTYFESPETDLHIAENASSIVYADTCSSKRDY
Ga0307514_10000009326	F008227	N/A	MDTQPPPPGESGSNTGRLAGATSNTEILGTQQECRHKVVHRDTANAATKYMTQDTHLKIIRKTGSRKNKKQHTVGC
Ga0307514_10000009328	F019765	GAG	MLQVMDNMEASCVFYVKVGTLAHLEQSEICLSTVKESGIQTITVRCDLIVSVIFM
Ga0307514_1000000963	F008531	N/A	MVPIIQLALGASMRSLRVQSHTKSCETHERKQQFGENECTDIGKSQRLRKEGNARINKVSAMRPGLSKLIEIVYISRYFE
Ga0307514_1000000984	F008531	N/A	MAHVIQLAFDAFMSTLGVKGRTKSWEAHKHDDQFGDNESIDIGQRQRLRKEGNATINKVSATRPGLANIIEKVCISTYLESPETDLYIPDNAC
Ga0307514_1000000985	F026456	GGTGG	MRALVMKKTQLKADLYFAVKFMCQKLAKYYTDISPMTGMLLNSAHILDPFRKLRLLRKWDKGMDINPEDETSYNTQYQEAVLPYVENQYCAKI