Scaffold Ga0307514_10000004

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000004
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 685282
• Total Scaffold Genes: 813
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 549 (67.53%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F016905	Metagenome / Metatranscriptome	243	Y
F048690	Metagenome	147	Y
F051592	Metagenome	143	Y
F063295	Metagenome / Metatranscriptome	129	Y
F078047	Metagenome / Metatranscriptome	116	Y
F079413	Metagenome / Metatranscriptome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y
F081959	Metagenome	113	Y
F086388	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000004138	F078047	GGA	VGGNFSGTLESGRMGDNLEFFGEVLGLFLVICLFYYYIIHIHA
Ga0307514_10000004157	F063295	GGA	MWVKRCPRRCYGALNGRLLWQLQRLFKIKFLNEDGAFVEYWLALALTTIPENTGNLDPVSKFVQGRKAPAAAALQVFSMGNIVGCAHVNPEIATSSRIGDRRNE
Ga0307514_10000004166	F048690	GGTGG	MLQYMENMEASCVFYVKVGTLTHLEQSKTSLLTVNKRGIVRLAVQHDFIVSVSFMYYPGDHLRQTSAGVLSLEQCPIYS
Ga0307514_1000000417	F086388	N/A	METGDQTAELLAMAAVKEGNRTLAADDIDWCVSQIECLCEWHVMNFYPVILNCRHHVVASQMGHQVEPYSMSLVEILSSTCSVKQR
Ga0307514_10000004170	F051592	GAG	MRLHEVENPLLEVMKQANLHCIEEVGLQEVAHDTGYMSEHVESSVNMARQEFGIGFLGVGIAERSI
Ga0307514_10000004195	F081959	GGA	MSTGMRVRMAMMRMSKKKHSKPIMDQHRMWRTEGIVLESVKIGQYISDL
Ga0307514_10000004202	F006048	AGGAG	MLKQWPTLDITRTNRYQVRVQVDMVKSHFIQSVRDNIAELYDLHCFESAAERLEFIDSVLADNKYLFPVAERVKGGVRCPNPMQRESKATNEWLLSTLLSGGSNPTVYLHQSLSSGK
Ga0307514_1000000447	F016905	N/A	VTGLSMPGHQYTPAEYAQQQMVESFGNLLFQLEEAHLTHTYRVVFCFCELDTIDYLVIRYLNTGALPFEEFSEDWLFDGEA
Ga0307514_1000000460	F079413	GGA	VTELRIQVKDLLFEDAYLFKVIEDKKSWFTRMEVLDFIYHQIFFIANSLGRQLITSEFFQPLALQMLVLVAAAIHCGLSEYATGMKITVMFSHDEYQGKFVLLR
Ga0307514_1000000479	F080709	GAGG	MREMRGDGGNDHEKLGLKRISCASQFTIHNTVRTSPDQACNYTDTRSFQPNQVCCTPDF