Scaffold Ga0307514_10000003

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000003
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763946
• Total Scaffold Genes: 786
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 315 (40.08%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y
F048690	Metagenome	147	Y
F062316	Metagenome	130	Y
F079403	Metagenome	115	Y
F079413	Metagenome / Metatranscriptome	115	Y
F079540	Metagenome	115	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000003166	F062316	GGA	MVATIASTSYQDLPDLISVSTPTDHHIRMHKYDRNCTSRTNWFDLAGTAGLVFESESLNVFDSIEAILSVTFEEEPLEAYFLEQSTVPSPWNTDWTDAAREGAGLDINDPVFXPHWTRYSGAHSXFRCDPEEPCDCEEHNCAGTHSTIGHAAAAATTAKSLGIPLIVVVPLTLTPSELDAYIWNW
Ga0307514_10000003189	F079540	GAG	MHVRXVCRSIKLTALRDASEDFGIFNFGVIFRLQINEDWGHDDSQLVLGYDQNVLLHSIFIKLQNGLWYYHQPFHNPTSVECLXLDCKVEYTNANQGIMPEAHDIWVQYTQSEENDLDNTFEEQIPSFPVLYFSWTPPNQILQFQECLPVGKALSTVSMSCKKTEQWVLHPQAQEYAVVIPTKYKDLHSWADCVDGFIRVVKQTNKLHNVSTGAIVGPALLVRKDAVSGSINIVRLLTSRVDFGMYCTVYQLDWNAXFRCTAVR
Ga0307514_10000003225	F079413	N/A	VGSETELWIKVKELLFHDAYLSKVVDDKKSYFTRMEVLDPIYHQFFFTTNSLGHQPTLSQYFQPLAPQTLALVAEAIRCALTEYACGQKATVMFSQDEY
Ga0307514_10000003350	F048690	GAG	MLQHMDNMEASCVFYVKVGMFTDLEQSKISLLTVNKAGIVRLTIQHYLIVSVSFMYYPRDYVRQTSAAIVSLEQFSIYR
Ga0307514_10000003361	F079403	N/A	MGPQNSHGGKHPDSMIKDFRALLGHAQDAMHCVAIYCGMLKFIIYKSQNKMYILGEQLHTMELGICHGIKVQLEGLEDERISQMGRGTGSQSWHAVDXSNDWVXVKQCPGRCYGALNWYLPWQLQXLFKIHLLNEAEALIEYGLALAPTKIPVNSGNLYPVSKYFPVKTAPGAFPLLVFRVGNIVGCVHVLPEIATSSKTGDGPNKRWIFNSHIDLATWSDVCNS
Ga0307514_1000000363	F038958	AGTAG	MTDVIANLFIDLHLSNAKLTLFLDGNCFLIASTVSVYSLQQILLRVLPEGNTNLLPNALYERHSSRFDMSFIVIXAKTNANMR
Ga0307514_1000000365	F026456	N/A	MFDHMDGTMPALSKKKTQWKEYLFFAMKFARQMLSNYHIKVTPTTSMLLISAHIADPFRKLQSFRKWDKGLDINPADKTSYTTQYQEAFLK
Ga0307514_10000003675	F088003	N/A	MEHHDVVSCGIFAYEFHDERPXQWTKQALITLEEAMEAYMVEVIAKSHY
Ga0307514_1000000399	F079540	AGG	MNANQGIMPGSQHIWIQYMDCNLDNTFAGHVPSFSVLYCSYTLQDQTLQFEEHLPAGKTISTISNRCKKTSQLILRPQVQEYVVVISTKYKDPHVWDDWVDRSIWVAKLTDKMHIIPVGAIIRPAHLVEEXENAASDRIDSIWLVRNHVDLDTYWTAYEVTIHESRCAGSR