Scaffold Ga0307514_10000001

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000001
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 814396
• Total Scaffold Genes: 845
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 314 (37.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F008531	Metagenome	332	Y
F038958	Metagenome	164	Y
F063295	Metagenome / Metatranscriptome	129	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000001323	F004891	GGA	MIARNSGLEMGVGKMXRPLREVGVLALPDAGLDTMPHIESVDKNAVGAGVLQLHXPGMAVGVYIDRR
Ga0307514_10000001533	F038958	N/A	MFADVFPSKAKLTSFLDGNYFLIASTVSHYSFRQMLLSMLPDGSTNSLFNALYDRRSSRFDFVFHGI
Ga0307514_10000001670	F088003	N/A	MLFVRTVRITEHHEVVCSRIFTDEFPDMYPREWTKLSVITLEEAKEAYMWEVIAESHC
Ga0307514_10000001730	F008531	AGG	MSSLGVKGHTKSWEANERDQQFGENESMDIGRSQRLRKVGNARINKLSAMRPGLAKIINKVCIS
Ga0307514_10000001838	F063295	N/A	MQCPGRCYGALNGRFQWQLQRLFKINVLNRHGAFVEYWSALAHTTIPENLGNLDPVLKFVQVRKSLAAIALKVFSMGNMVGYLHVIPKLATSSKTGDEQNQR