Scaffold Ga0302133_10164022

Overview

Basic Information

• Taxon OID: 3300031646
• Scaffold ID: Ga0302133_10164022
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_33.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1119
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302133_101640222	F013357	GGAG	MARARYIPGALVEARNSKYGKGFGIILTGPIMDTKAATQYRDLEDEQEWFKVQWFEKPGNINSWAFRHTGGQVDMTKNQIKLVRR
Ga0302133_101640223	F064629	GAG	MTKLYEDCDPVLIAHPNRKGLRNFTWTNDAIREWEEIWHGLWRFGYKWEWQNADRYARRYGDTFNLFACHDDAARLDMAIPLPGIIVIEEVRELLLDDINDANELDHLIGAIDRWLKIYCAL
Ga0302133_101640224	F062279	GAG	MLEKMKALLPHCINMVLAIILLAAGGAYVLINGLIMTQVINDLRLDTYVTFDTGFSIVMLILLLGW