NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302133_10075883

Scaffold Ga0302133_10075883


Overview

Basic Information
Taxon OID3300031646 Open in IMG/M
Scaffold IDGa0302133_10075883 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061276Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0302133_100758833F061276AGGAGMTKYMTRKVTKFAFVMPVYDYDITPHKDGVQDVMIPCEDRHMVGYNVYGWNYKKQSWKGIGIGDYYDEAKEIADTYDKKMVKKLGVYCDDMGDKKSYDER

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