Scaffold Ga0308001_10330884

Overview

Basic Information

• Taxon OID: 3300031644
• Scaffold ID: Ga0308001_10330884
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 565
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006199	Metagenome	379	Y
F021188	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308001_103308841	F021188	GGA	MPDTEELEIIWIPEEEAKYNLTVENEQGVNELVDLPASTVDRICKKKFGHTNWARMGAIFPEELVRNPHEIDY
Ga0308001_103308842	F006199	N/A	DSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFHKNVEDIILGVQPDKKQRMLSTDPYASQMKE