NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318555_10420199

Scaffold Ga0318555_10420199


Overview

Basic Information
Taxon OID3300031640 Open in IMG/M
Scaffold IDGa0318555_10420199 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001773Metagenome / Metatranscriptome637Y
F027131Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0318555_104201991F001773N/APNGGRIGWEFPMRPALVVTSALLLFLGTGIAEAADPAQLAETAGFLLGNAHRCGVPTDRVEDAGKVIHRMIVAASCDPAEEAAANARFTETFRASAVPDQDGDVSIPPCNVVIAQFERLERHHQQAGMN
Ga0318555_104201992F027131AGGAGMERDGYLTVEERARISKIQDSLIDRYVEQKEAIQEGNRCRAVELEFEIKELL

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