NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302138_10075490

Scaffold Ga0302138_10075490


Overview

Basic Information
Taxon OID3300031637 Open in IMG/M
Scaffold IDGa0302138_10075490 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1255
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Chaetocerotophycidae → Chaetocerotales → Attheyaceae → Attheya → Attheya septentrionalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)86
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047107Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0302138_100754902F047107N/AVNRVRGVRLPVGNRTFLGGQGLEDATQPREHGQSAVLQFLDLQLFQVARFSQAQRVEPATRGDVPDGEFVKDRVDQTGSVPFGGANQDGFDDQNVPEGRVVRAFRRQRGNSARKLVRDGGAVIRGAQGTRGEPRDAGAVLGGPGAGDAQLRPSAVDDFTLGVLLVAKRDDRGFAPARVGTEFRVDVSLDNLGDGLGLFFFNSKRKKEILIRQSKIIKSNRNRRFFLSRLLSNENIFFSKF

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