Scaffold Ga0307987_1030895

Overview

Basic Information

• Taxon OID: 3300031631
• Scaffold ID: Ga0307987_1030895
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004479	Metagenome / Metatranscriptome	436	Y
F038175	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307987_10308951	F038175	N/A	MKNVKRVGFFKLGKAIKFNENSWGAIGGDCEPKQLINSIAARNPDVEYWLLSPNDLGRVRAKEKPAVQSLFGAPVEVKLAAAENIHEFHSKMANRKSADETVKLIKALDLDFIFFYTGPSSTVNIPD
Ga0307987_10308953	F004479	GGA	MHNSKILIGNSGDKVFLQGNKVIKEAGHYPEKFKQQMEFLMSCDHPNFIDVKPISETSYEMKRYPTWYDNILEQPLVKSFDQLENLIGIIGKFDNIASDVKTEDYFEKLQLRTGYTYEGKFDATSSWGFVHGDLTVSNMLYDKDFLFIDPRGTEEQDYYDYGKLMQSFVMEYESHIYNNPSKKYSKFCKGAEKIMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGRFLAKGHELFDELEIKYTK