Scaffold Ga0307987_1013536

Overview

Basic Information

• Taxon OID: 3300031631
• Scaffold ID: Ga0307987_1013536
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3327
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307987_10135362	F004606	N/A	MKTHRIFNKGQTVYCLLASHTNPNILLPVKGTILDSKWDPVNPLYQIRIIKLYDNMKFLTQHFFAMNFRHEFGNRARKMILKAEDFKTTRALEERLNDKDRERFYVVIESVMCTKTKVGLSGLFEKVQFYMISKNLKEIRDISTRAFFKGPLSLDSVKEFDVRYKKSWSDKFKKGGLDIDKYLNSLG
Ga0307987_10135363	F008190	AGGA	MEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDYYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQNYVESLSSKPITYKIYHSPDIIVNGTAELFDDIIEFE
Ga0307987_10135364	F018962	N/A	MVKIVLEAARNGVIKKVIDDNHGGGKEHFTSTDVYEKKENKSKENIYIKRFFFDLCDDLGLELGSKFDKDVLDINTKWGSHFEPTTKDIEFKIKKLKLELKELEEWKNT