Scaffold Ga0307985_10026909

Overview

Basic Information

• Taxon OID: 3300031629
• Scaffold ID: Ga0307985_10026909
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2593
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019558	Metagenome / Metatranscriptome	229	Y
F042312	Metagenome / Metatranscriptome	158	Y
F048637	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307985_100269094	F048637	AGGA	MTTYIIYQRTNVDSDRINSMPTSTYAKAFFALGMPTHDNVEMVVSDGLHHDMYEPTMIMHDFYGKDKRTPFEAIFDEGNGYGDGTLTTTEIRKHPSMSVGDILYDLTNGWSHVCMPVGWHSLNLTLQLNEA
Ga0307985_100269096	F042312	GGAG	MFVIFATKSLNDGTKGFRFNILGTKGLVRKRRTKSRGFKLFQRDKCMTSHHVGKYSLYIERSRTAARKLAHFAG
Ga0307985_100269098	F019558	GAGG	MPTMAYDVTLEIDGVTSIVSLDDTYPAVDGWATATEFAVHMAMHDHPDANVEFIDCAEYVHEEYTQYGFIHETPVVLQ