Scaffold Ga0307985_10020847

Overview

Basic Information

• Taxon OID: 3300031629
• Scaffold ID: Ga0307985_10020847
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3060
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F089161	Metagenome	109	N
F103381	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307985_100208471	F103381	GGTGG	MIEHFEKFNDYGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPSSAPAERGKAVESGLNMILQGVSLEEASEKTVAEFDGNCEGMTDP
Ga0307985_100208472	F089161	AGGAG	MSDKYNLSDELSQSEEIETEELQQSAISKHLKDICVMDKLVYALDEYILKFGRVSNVHDQCFDLKVQVLENKKHLQEWVDKI
Ga0307985_100208474	F005751	N/A	MDIYAIQFDPHKISHQHEELGMTFADLDTAVELMKKEEKMVIAELTIYYSRKGNYKNMTELNGLIYSDTKFKDYFDRYERTLKQRNRSKIRFESFKAFRDDLRTKVVNERELAKHL