NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307985_10020847

Scaffold Ga0307985_10020847


Overview

Basic Information
Taxon OID3300031629 Open in IMG/M
Scaffold IDGa0307985_10020847 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3060
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005751Metagenome / Metatranscriptome391Y
F089161Metagenome109N
F103381Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307985_100208471F103381GGTGGMIEHFEKFNDYGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPSSAPAERGKAVESGLNMILQGVSLEEASEKTVAEFDGNCEGMTDP
Ga0307985_100208472F089161AGGAGMSDKYNLSDELSQSEEIETEELQQSAISKHLKDICVMDKLVYALDEYILKFGRVSNVHDQCFDLKVQVLENKKHLQEWVDKI
Ga0307985_100208474F005751N/AMDIYAIQFDPHKISHQHEELGMTFADLDTAVELMKKEEKMVIAELTIYYSRKGNYKNMTELNGLIYSDTKFKDYFDRYERTLKQRNRSKIRFESFKAFRDDLRTKVVNERELAKHL

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