Scaffold Ga0307985_10009894

Overview

Basic Information

• Taxon OID: 3300031629
• Scaffold ID: Ga0307985_10009894
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4836
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F005848	Metagenome / Metatranscriptome	388	Y
F056893	Metagenome	137	Y
F094795	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307985_1000989416	F056893	N/A	MKRHTGITKVHKTLTMPISFYALVEQIRSKQGLDTAEEAINVSVMHLARKIGLEA
Ga0307985_100098943	F094795	N/A	MKSNEILILGGTILAALVLFKGRASSSISGSIPFIAPFSNLLGKAEAKAINQFGSNIQTLQSVKESNLGIAQSILDLERNTADVKISQIQTELDKVQGYIGSQQKFSASQAFTTIAPQGFTAQGLLGKFDSVFNSMSKLWTGEKGPLSGVSIFPDFKLNLTPGNRGIIAQQAQFETAQQNIGKANEMVQRQQGEIDRLNEEYQTRFGSLSRYG
Ga0307985_100098946	F005848	AGGAG	MALPVQRTYTATVAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNLIDPAATQLLQYTLVKNGNATSVRAFSSAISATTAGRVPIGPVSMSSGSYQWQATQTIGALFNGQILVRYGSPLN
Ga0307985_100098947	F004537	AGGAG	MPFSNSIVNNYQLNSGNTPLLYPVRVICLAGVTTGISFPDQFLGRAISLKVTNNDAANAASYDYNLNGQFQNLAASAFSTIDNTVINYLTITAGAAGTVLVEAQVLPASRSEIPIEVQV