NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307985_10007077

Scaffold Ga0307985_10007077


Overview

Basic Information
Taxon OID3300031629 Open in IMG/M
Scaffold IDGa0307985_10007077 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5902
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019562Metagenome / Metatranscriptome229N

Sequences

Protein IDFamilyRBSSequence
Ga0307985_100070776F019562AGGMDWYHRKLKLQYTPSVFNEIIEHAQRTTWKQGYDQNGLVWNVEELPLSVEDFPILNELYNGLNAEFKRPSFFLSSVKPGGLVNHIDHRKWGNFGIPLLGDFSNSPQYYYDQFNHPVEQFILDTPTIFYTRMLHAVPRKLEDTTPRWVLMMDLFDWTDNLFKKIDNNTIWTDTENFKYA

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