Scaffold Ga0307985_10004290

Overview

Basic Information

• Taxon OID: 3300031629
• Scaffold ID: Ga0307985_10004290
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7743
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F018451	Metagenome	235	Y
F019560	Metagenome	229	Y
F026714	Metagenome	197	N
F031263	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307985_1000429010	F004220	GAGG	MVEKDKVDWCYYFKSIDRWIRVCTKDMNEGFSVFTKQTRVKEHYKKMADTGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMETNSGHTKMFHKEDGNWQQL
Ga0307985_1000429019	F019560	AGGAG	MQKVKIKFSVITPCEKEYEIVDQELWDFGKDRFKELAKSDDCQEIFSDERIYGLEPIENSFFEDSPNREVHKVENIVIDGKNQWY
Ga0307985_1000429020	F031263	N/A	MKTVILYLIVILNNGNDYELRKIISYEELTCFNWYEKNIIFLDNNSNKYNDLYVSGYICQYQKGE
Ga0307985_100042904	F018451	GGAGG	MSKFIDIQSHNKTVVPKDYKFNKIQHSPKVLEVKNNMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKI
Ga0307985_100042906	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDIMAIRKEQFPLLHYTVGIISKRLDETHNRMITDVDPNTCNISTLHLNSQTIE