Scaffold Ga0307985_10001786

Overview

Basic Information

• Taxon OID: 3300031629
• Scaffold ID: Ga0307985_10001786
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12143
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F002715	Metagenome / Metatranscriptome	535	Y
F017718	Metagenome / Metatranscriptome	239	Y
F052651	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307985_1000178615	F002715	AGG	MAAEELQSVKLEVGLLKNKVEVRGRQIDNLLSKLDLTADKLQELTVQIIKLNTRQEGYLRHYTTMGEEFKILHTRIGDLHDKQLDMYKEIEARLDRLDQYKSKLMGMIIVVGGVVGTIVASAISYFFKE
Ga0307985_100017862	F000659	N/A	MKTFKGYLNEVNSKYIVSKNPSDKKWYAMGHVGNNKWMPVSSGFKNKAQAQKWAKSQDKVDIVARGEISDA
Ga0307985_100017866	F052651	GGA	MEKNANIEYFNDKSDAEVLRNVSSMVNDIVNAKPVDSLEVQESDDTEPKEELPQTNPLVDLVGKAISAHKPKGMFMQGVQTNDNPKL
Ga0307985_100017867	F017718	AGGAG	MTIPNYDSSLNLVNERLKQIDAITAKFAGFPDVQKKLLDARNSLVESEEEIMTYYDLTSLEKYNKP