NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307985_10001704

Scaffold Ga0307985_10001704


Overview

Basic Information
Taxon OID3300031629 Open in IMG/M
Scaffold IDGa0307985_10001704 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12361
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008085Metagenome / Metatranscriptome339Y
F022672Metagenome213Y
F027871Metagenome / Metatranscriptome193Y
F050657Metagenome145N
F074779Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307985_1000170415F074779AGGMKSFNVYLVEAQAGFNTKDMIFTNADTPALILSPTALERAFGGLERINAWHVTDLSGLKGLIKLQGKKGSISVLTEIEPSDHQPFEGIETGGGFVVELEGTELVSMDQDAWSERLEGGRRGISITKELFPNMYRHLEFMVKKMYEKYSKEPYSRDSRKAGIAFNKLGQTLSQKEKGQFIKEYIDNCEEILTKNKRARDELRKYGRAMNVSLNKKHFYNESVVNQISIKNVYVVSEKWEQFGRVDWGSEGDDELKMLKSVWKNIQIKSQKELITLVNKK
Ga0307985_100017044F027871N/AMDSFLHKIQEIGIKFYLQILFTVGDFLSRPTWVDKHVKVCYNRLDEINSEYDKLTRHL
Ga0307985_100017046F008085AGGAMAGSIIVRYAKKSYKQQTVDETGEFKNLNHSVDIIPKSMSIMTFESHKAAGKFASDIADKGYHIIEIIDDYKK
Ga0307985_100017047F022672N/AMTIKNKYKYWAVEELESLLGEHIHERDHFAETFTERSDLNKEIQIIKSEIKRREDSE
Ga0307985_100017049F050657GAGGMSQKNKREFFKEGNKSDTDLRTTLNDPFFETGDAPYKECSNPNDAEDKSLCISIRDGSAFDGAIIRYTSFKLVEQELTGDDIACQYEYDIEVPPNDLDYEITDEDGNEFEKHLGEWLIDIIQKQMDQHAAADRDTNIKEPDTQ
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