NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10164560

Scaffold Ga0302118_10164560


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10164560 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1077
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034953Metagenome / Metatranscriptome173N
F046426Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_101645601F046426GGAGMKLKLKLGTVLVCLMFLMGCSVVVEMLPSLANFAIGLYNADDYYSKECLWYNEVKLNDDTKKWLLESNPPEGVSKDLSTVSRNNDLYKEVCKDEEEEK
Ga0302118_101645604F034953N/AQLILLIKTYEPNTPVIITWRDAVDYSDEVTLKTLEVKEILYDTIGFFLKVIDDYVIIAYNKADDKTYKGTGMIPCSLITDIRRLSDGYGE

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