NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10117695

Scaffold Ga0302118_10117695


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10117695 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1316
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010129Metagenome / Metatranscriptome308Y
F076176Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_101176953F076176GGAGVEENKWKRLSDKIQDEQWSTHKIKALWKKDPKFGKWFRKNVLDDYSKESGHRFYPSKFRGEYGEK
Ga0302118_101176955F010129N/AMEPRGSFQTVSGDNTVKRDCFYKVTVTTCVPESINFFEDEEIYYWGYYPYSMVLKDVKTLYKEGADAVELEIITQKQFDKRIEPYTS

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