Scaffold Ga0302118_10097902

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302118_10097902

Scaffold Ga0302118_10097902

Overview

Basic Information
Taxon OID	3300031627 Open in IMG/M
Scaffold ID	Ga0302118_10097902 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1463
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	74
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029562	Metagenome	188	Y
F035078	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302118_100979024	F035078	GGA	MKEQATKIEKFRSHLLDRIKEGRVSTIDLDPDGNPTFEVMPELQNYSWVLDLANREGVVAIATSGSAGSRLTITEEETNV
Ga0302118_100979025	F029562	GGAG	MKVGDLVRVRSTAVSIDWTPEQGYLGLIVSPVRLGGDARYIRVKSVKTGSALWIRAYRLTPCNETEGA

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