Scaffold Ga0302121_10026914

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302121_10026914

Scaffold Ga0302121_10026914

Overview

Basic Information
Taxon OID	3300031626 Open in IMG/M
Scaffold ID	Ga0302121_10026914 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1905
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	74.0136	Long. (^o)	-139.5971	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077805	Metagenome	117	N
F092744	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302121_100269141	F077805	N/A	QNIVPCEITFGTRKMAETFAGITYGSKIERVYTDGELFDLWSQGQIDVGAW
Ga0302121_100269144	F092744	AGGAGG	MATITTLETFTAKNHPTISVELSKLTNRKGENLYLVSFLDMMNSQEITLGRYHSLTSAKEGFDLHKKAAQWGELYA

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