Scaffold Ga0302135_10187905

Overview

Basic Information

• Taxon OID: 3300031625
• Scaffold ID: Ga0302135_10187905
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018813	Metagenome / Metatranscriptome	233	Y
F070548	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302135_101879051	F018813	AGGAG	MTMPCSIAGDMSIGHAGFSPAPITPSGGAAAKVLVMGSIPHVAGDPIGPHVLGQAVHAGAVQKVSTTVTAGGNGLARLMDKGDCQSLILGTAATVMVGG
Ga0302135_101879053	F070548	AGGA	MANWNSKELQTPDAIKKIGQNAQNAINNLDILLKLVKQGSEVAKLFLLLSNPAGALIKLAADEIIKAANDYKEIGMFYLFINPNDPGYGNQTSRELGLAIKRDGLTGLYQFKSNVMGIGPGQTATFTVG