Scaffold Ga0302123_10321822

Overview

Basic Information

• Taxon OID: 3300031623
• Scaffold ID: Ga0302123_10321822
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB21_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 738
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 139

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011854	Metagenome	286	Y
F038717	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302123_103218221	F038717	N/A	RNAPSSGDMVRGATTGATGTVLVVSVEDITGDSNAGTFPTNDAEGYIYFVVTSGTLQDGEKLYFLNKDSAYGGDFDVEFT
Ga0302123_103218222	F011854	GGAG	MGTPTALRKERSVLTGTSFANNTTGAITAQMLRQSVESGMGGYACLVAKAGTPASQAVASGATATIDWNGNTAGANVVDDTATVSATVVGSDADFANDRIRIYDKGFFMVTFGVSFAQTGTDTVVWTFRVATQADAGSVVYPGFDAAVQRTTATVDNMASINGI