Scaffold Ga0302123_10135930

Overview

Basic Information

• Taxon OID: 3300031623
• Scaffold ID: Ga0302123_10135930
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB21_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 139

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011036	Metagenome	296	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302123_101359302	F011036	GAG	MKQFKLEVSHASPPQLATIALELKIMANSWTRHGPRILINNKKLQAPSLRIPGSAKSYKRQASSLTK