NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302126_10136773

Scaffold Ga0302126_10136773


Overview

Basic Information
Taxon OID3300031622 Open in IMG/M
Scaffold IDGa0302126_10136773 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002928Metagenome520Y
F020444Metagenome224Y
F059354Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0302126_101367731F002928AGGAMSKKYLVKFNCVIGEYEHMASYIFDKRKSEWGYCKEFWGISKKDELKENCFWDDEMLNAIEVYSETEITNDEAKKIQQLGLA
Ga0302126_101367732F059354N/AMTKLTSVYKKIKKKKKWDALPIMTYKFTMYKEDAAGNQKFYDYNGDHSSFTDGIYNEDLNEIEKEDA
Ga0302126_101367733F020444AGGAGGMKKRINHNNLLPWFTDDHGTLPAAYLKSVEKLLDGLQTDKQQATSAKLQAPSLTDGEG

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