NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302126_10097220

Scaffold Ga0302126_10097220


Overview

Basic Information
Taxon OID3300031622 Open in IMG/M
Scaffold IDGa0302126_10097220 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1152
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009110Metagenome323N
F022198Metagenome215N
F030097Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0302126_100972201F030097N/AKLTNPIRKPIKQMKALDIAGTQSKVSSCMGFVASGAARDAYRRLLTASTVGQSKGEQRKSVFSRTTKEGVKK
Ga0302126_100972202F009110AGAAGGMTESMITSAVLYMESLKDKVPPADEEEIIVKHGTPHMRTLGIDPHEAVKAVGKLQAQGVMVKDACPQVGISLSQYYKTKKGITNGK
Ga0302126_100972203F022198N/ALLSRKYWNASQLKQNMKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIAPGRCLAIHENGNIAPLRLKESY

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.