Basic Information | |
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Taxon OID | 3300031622 Open in IMG/M |
Scaffold ID | Ga0302126_10097220 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1152 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 75.0007 | Long. (o) | -150.0027 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009110 | Metagenome | 323 | N |
F022198 | Metagenome | 215 | N |
F030097 | Metagenome | 186 | N |
Protein ID | Family | RBS | Sequence |
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Ga0302126_100972201 | F030097 | N/A | KLTNPIRKPIKQMKALDIAGTQSKVSSCMGFVASGAARDAYRRLLTASTVGQSKGEQRKSVFSRTTKEGVKK |
Ga0302126_100972202 | F009110 | AGAAGG | MTESMITSAVLYMESLKDKVPPADEEEIIVKHGTPHMRTLGIDPHEAVKAVGKLQAQGVMVKDACPQVGISLSQYYKTKKGITNGK |
Ga0302126_100972203 | F022198 | N/A | LLSRKYWNASQLKQNMKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIAPGRCLAIHENGNIAPLRLKESY |
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