Scaffold Ga0302126_10074471

Overview

Basic Information

• Taxon OID: 3300031622
• Scaffold ID: Ga0302126_10074471
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1367
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 75.0007
  • Long. (^o): -150.0027
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065132	Metagenome	128	Y
F080523	Metagenome / Metatranscriptome	115	Y
F103908	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302126_100744711	F080523	N/A	KRMRKELQQAYSRAGKKHGLTAYQMQAATWVTWKRIHNV
Ga0302126_100744713	F065132	AGGAG	MTFAQYLKIETGLGGIGCTDKQFIQECLAYILPQAKHHHLYRTARHLFIRDGLVYLNRARRLAFETIPNRENNLPPCEGELKQAWYLNEISKL
Ga0302126_100744714	F103908	AGGAG	MRQQNITLPIGKRGHTLSIAQGVGSGSLKGFQVEVALLDALGQFVNSGEWWVDATYEQRQEDYYDDVVSGIGSDDLQWVITKARKWVGI