NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302126_10074471

Scaffold Ga0302126_10074471


Overview

Basic Information
Taxon OID3300031622 Open in IMG/M
Scaffold IDGa0302126_10074471 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1367
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065132Metagenome128Y
F080523Metagenome / Metatranscriptome115Y
F103908Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0302126_100744711F080523N/AKRMRKELQQAYSRAGKKHGLTAYQMQAATWVTWKRIHNV
Ga0302126_100744713F065132AGGAGMTFAQYLKIETGLGGIGCTDKQFIQECLAYILPQAKHHHLYRTARHLFIRDGLVYLNRARRLAFETIPNRENNLPPCEGELKQAWYLNEISKL
Ga0302126_100744714F103908AGGAGMRQQNITLPIGKRGHTLSIAQGVGSGSLKGFQVEVALLDALGQFVNSGEWWVDATYEQRQEDYYDDVVSGIGSDDLQWVITKARKWVGI

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