NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302126_10048589

Scaffold Ga0302126_10048589


Overview

Basic Information
Taxon OID3300031622 Open in IMG/M
Scaffold IDGa0302126_10048589 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033958Metagenome176N
F040865Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0302126_100485891F040865N/AVMYYNLDIVAIDGPVFSGSFKSIYPMAEKIVYHLGSNFAAARGYAVSQDGVCTAMIAGCTWTDILEAVRDMESQEESNNARASYEYWGRAIGDIDADGEPAF
Ga0302126_100485896F033958AGGALDGEILRMETLSRRLEFDKHGQIVFRFGDNWSLSVINRGYGASEGLFEIAPMVGGDIEFVEGVSSEFDNVRGYLTEEQVFEYVDKMAKITDHAAVLSDSNLPYW

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