NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302126_10024014

Scaffold Ga0302126_10024014


Overview

Basic Information
Taxon OID3300031622 Open in IMG/M
Scaffold IDGa0302126_10024014 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2752
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014018Metagenome / Metatranscriptome266Y
F016148Metagenome / Metatranscriptome249N

Sequences

Protein IDFamilyRBSSequence
Ga0302126_100240144F014018N/AMKLKQDIHRTPKHERTELEQGFRDKAANSFRTSRKCENTYSEALYFGQYIANKWAAVSVRTSHRYGLMHNMTEEHYDIVSETKAESYTNKLMRGYDALEEMSKDSL
Ga0302126_100240145F016148N/AMIIKTATYPYGPAKHMDADTLVQRLQVVSGQQRFVDDYVGSLCDGDEYWISERVPDKPKKRTGDQILSWLEESGIDPEFQYDVDMRPESVILYSKQGQSLVTYPYGTGCLREAAEFVMDQEGRGDS

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