Scaffold Ga0302126_10022390

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302126_10022390

Scaffold Ga0302126_10022390

Overview

Basic Information
Taxon OID	3300031622 Open in IMG/M
Scaffold ID	Ga0302126_10022390 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2872
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED46	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040328	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302126_100223901	F040328	N/A	FVTCNLKYGKVTVQLQMGWYYHEKVRDVTVITDKGTLVWNDAENKSKWISQTIENGRQIQHMDQNKTFTESISPLQRQITAFADYCEKDKLPDSNMDHIKRVTYIVECMEKSLKTGEVICPSKEY

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