Scaffold Ga0302126_10004866

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302126_10004866

Scaffold Ga0302126_10004866

Overview

Basic Information
Taxon OID	3300031622 Open in IMG/M
Scaffold ID	Ga0302126_10004866 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7194
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056353	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302126_100048669	F056353	N/A	MMGHGYYGSSLSDQHSYERKFAWLSVVTNSKKRVWLKYYYIRYTYYDNMGKPPIKGLCWICIFTENEYLMELLKNE

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