NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302114_10410139

Scaffold Ga0302114_10410139


Overview

Basic Information
Taxon OID3300031621 Open in IMG/M
Scaffold IDGa0302114_10410139 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029901Metagenome / Metatranscriptome187Y
F036782Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0302114_104101391F036782N/AKSADLSYDIAVAKRNALEKAHSRQVVVYSEHLFRADPQTICLVRTLKESHDSFCVLDTNSNPVEITEPDEFLSVLVERNQESLNTYNQIYRTFTKKDA
Ga0302114_104101392F029901AGGAMSRGVLLFCFDTEHTRYHKILERCVRLVKRNICKEITVVTDFATYQRMSPMGFINYKFIEPELGNKLN

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