Scaffold Ga0302114_10166087

Overview

Basic Information

• Taxon OID: 3300031621
• Scaffold ID: Ga0302114_10166087
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 956
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina → unclassified Idiomarina → Idiomarina sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053264	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302114_101660873	F053264	GGA	MSISHRTNRLKLVGTPAVEQLQNGRYKLTVNCTTINRREDWYSSNKARIFPDFGSLESAEMSIDGLAPRTGEAYTDMRLVSVQSSTQGEQYIVTLVYQTLGASFVQVKDDTIDLELNGLRGVRRTSIAKAGTDIPTDDKDIGVDYIDHQIDAETAVRCFLASYEIDDTDSYREFERTYIQAGTLSVSTRNLADGVKEVKTVFLVTE