Scaffold Ga0302114_10072140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302114_10072140

Scaffold Ga0302114_10072140

Overview

Basic Information
Taxon OID	3300031621 Open in IMG/M
Scaffold ID	Ga0302114_10072140 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1646
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038091	Metagenome	166	N
F064106	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302114_100721401	F038091	N/A	TNPIMSPLFTAQLITVASYNKLSAQTQADISVVAYSKQAYSRAMLSNVTAQANTNVVYNVTKNLSYSIAV
Ga0302114_100721404	F064106	AGGAG	MQTTQNTVTQAQALQHCAQQLQYVTDAANKHTYCINTAQEIVHVLQQLLSANANYAAIVAATRYSSDCVNEEKYL

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