Scaffold Ga0302114_10031483

Overview

Basic Information

• Taxon OID: 3300031621
• Scaffold ID: Ga0302114_10031483
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2730
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038423	Metagenome	166	Y
F040181	Metagenome	162	N
F076503	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302114_100314834	F076503	AGGA	MMTIETYGELCDNSNFEVVCEDEENDAVWVNGNPNSEDFTFKNWDEVKIELSKHFEDIVEISAV
Ga0302114_100314835	F040181	AGGAG	MGFDWMGNDGDVYRSLKGIANKGGYFGSVNQANFWMRCAQESGVHAGPCFSWGDSVELEPGEFFFFCEGSISANYATQAGVQRGWGRKTRYKTWGFVVDAAGVNLIYQLYRSYNDKDGGSGPNGSRTEVIWRRDNEAVEATIAGFEAIRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVSSRPGRWGTTNLYIIKTTDGNTLKYSGSNHYGEKVKITGRFTVKQHTEYNGELQTVINRPHKVESEVLDDTND
Ga0302114_100314837	F038423	GAG	MTEHDNFIFNLERKQTRIKEAIKAYKKLYLSDTASPPLKRGQKPDSGSTLKTKLLGNK