Scaffold Ga0302114_10024656

Overview

Basic Information

• Taxon OID: 3300031621
• Scaffold ID: Ga0302114_10024656
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3169
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048571	Metagenome	148	N
F094414	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302114_100246563	F094414	AGGAG	MSNLPDDGPFKEATEAATDDVVRQELVTYRKRDGYLVRQTTVRVFDSVDYIDNTTTAVLFKL
Ga0302114_100246565	F048571	GAGG	MEKSEYVHLLATSPWKEMQNYFDSVPPIEVKSTKQLDINTSDWVRFSIDNFDLATQKWEEPKAHYTVESNKWVTVNNLVGRNKHNSFELNYGMLGDGNDKLKAILGRDNIKLLGVDWDTVLVRLIVKFPGHGMAWHCDALDSYVLKFSVDDPNKVKRYWFSVDDWHDGHVFQVSKTVLSNWTKGEAYDIPFGIGHASSNFGYRPMYSVSFTGVLDS