Scaffold Ga0307508_10606722

Overview

Basic Information

• Taxon OID: 3300031616
• Scaffold ID: Ga0307508_10606722
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 696
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.0822
  • Long. (^o): -123.061

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012090	Metagenome	283	Y
F012842	Metagenome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307508_106067221	F012842	N/A	VHGCIEIHPKDCGGWIIVTGFRVLLISQHIFPEILLEVVLGVHAGSVKIKSICIQML
Ga0307508_106067223	F012090	N/A	LSEAGYDKIIEWVRSILPEGNRLKENFYAAKSMMKPLDLGYQKIDMCPNFCML