Scaffold Ga0307508

Basic Information
Taxon OID	3300031616 Open in IMG/M
Scaffold ID	Ga0307508_10010374 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8522
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (45.83%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

8522

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (45.83%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.0822	Long. (^o)	-123.061	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.0822

Long. (^o)

-123.061

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F029299	Metagenome	188	Y
F087977	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307508_1001037410	F029299	N/A	MANALTLLVQKLDAMARVVPTTFALTLCIRKKFALTVSVCKKRAASGSLTP
Ga0307508_1001037411	F029299	N/A	MANALTLRFQELDAVASVVRTTIVLTLCIRKKFASTVSVCKKRAVSGWQMP
Ga0307508_1001037413	F029299	N/A	MANALTLRVQKADAVACVVWTTFALTLFVWKKFALTVSVCKKRAASGWLTP
Ga0307508_1001037417	F029299	N/A	MANALTLRVQKADAVACVVRTTFALTLCVRKKFALTVSVCKKRAASGWLTP
Ga0307508_1001037419	F029299	N/A	MRCVRMANALTLRVQKADAVACVVRTTFALTLCVRKKFALTISVCKECAASGWQMP
Ga0307508_100103742	F087977	AGGAG	MRMAVRRMLAARTMVQVRCGEKIDELREIVSAALTVTVSGKLYNTT
Ga0307508_1001037422	F029299	AGGA	MANALTLRVQKADAVARVVPTTFALTLCVRNKFALTVSVCKKRAASGWQMP
Ga0307508_100103743	F087977	GAG	MRMAVRRMPAARTMVQVKRGEKIDELREIVSAALTVTDSGKLYNTM
Ga0307508_100103744	F087977	GAG	MRMAVRRMPAARMMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307508_100103745	F087977	GAG	MRMAVRRIPAARTMVQVRRGEKIDELREIVSAALIVTDSGKLYNTT
Ga0307508_100103746	F087977	GAG	MRMAVRRMPAARTMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307508_100103748	F029299	N/A	MANTLTLRIQKAYARACVVQTTFALTLFVRKKFALTVSVCKKRAASGWQMP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307508_10010374

Overview

Ecosystem & Geography

Associated Families

Sequences