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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031616 Open in IMG/M |
| Scaffold ID | Ga0307508_10005434 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12109 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella → Morchella sect. Distantes → Morchella importuna | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 45.0822 | Long. (o) | -123.061 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F087977 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307508_1000543411 | F087977 | GAG | MSMRMAVRRMPAARTMVQVRRGEKIDELREIVSTALAVTDSGKLYNTT |
| Ga0307508_100054343 | F087977 | AGGAG | MSMRMAVSRMPAAKTMVQVRHGEKIDELREIVSTALAVTDSGKLYNTM |
| Ga0307508_100054344 | F087977 | GAG | MSMRMAVRRMPAARTMVQVRRSEEIDELREIVSAALKGTDIRKMYNTMR |
| Ga0307508_100054346 | F087977 | AGGAG | MSMRMAVRRMPAAKTMVQVRHGEKIDELREIVSAALTVTDSGKLYNTT |
| Ga0307508_100054347 | F087977 | N/A | MSTMSKRMAVRRMAAARTMVQVRRGEKIDDLREIVSAALTVTDIGKLYNTM |
| Ga0307508_100054348 | F087977 | GAG | MLMRMAVRRMPAARTMVQVRCGEEIDELREIVSAALTVTDSGKLYNTT |
| Ga0307508_100054349 | F087977 | GAG | MSMRMAVRRMPAARRMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |