Scaffold Ga0307508_10003246

Overview

Basic Information

• Taxon OID: 3300031616
• Scaffold ID: Ga0307508_10003246
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16616
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.0822
  • Long. (^o): -123.061

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029299	Metagenome	188	Y
F087977	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307508_1000324613	F087977	AGGAG	MRIAVRRMPAARTMVQVRRGEQIDELREIVSTALSVTDSGKLYNTT
Ga0307508_1000324614	F087977	AGGAG	MRMVVRRMLAARTMVQVRRGEKINELHEIVSAALTVTDSGKLYNTT
Ga0307508_1000324616	F029299	N/A	MANTLTLRVQKADAVAYVVRTTFALTLCVRKKFALTVSVCKKCAASGWLTP
Ga0307508_1000324619	F029299	AGGA	MANALTLRVQKADAMACVVRTTFALALCISKKFASTVSVCKKRAVSGW
Ga0307508_1000324621	F029299	N/A	MANTLTLRVQKADAVACVVRMTFALTLCVWKKFALTVSVCKKRAASR
Ga0307508_1000324624	F029299	N/A	MRCVRMANALTLRGQKADTVAHVVPTTFALTLCVLKKFALTVSVCKKRAASGWLTP
Ga0307508_100032468	F029299	N/A	MANALTLHVQKADAVARVVRTIFALTLCIWKKFALTVSVFKKRAASRWLMP
Ga0307508_100032469	F029299	N/A	MANALTLRVQKADAVACVVRTTIALTLCVRKKFALTVSVCKKRAASGWLMP