NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307978_1145256

Scaffold Ga0307978_1145256


Overview

Basic Information
Taxon OID3300031613 Open in IMG/M
Scaffold IDGa0307978_1145256 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1056
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)646
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002016Metagenome603Y
F042110Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0307978_11452561F002016N/AVIFLAGLTILKKERCLGSVSGWGVDPVVALYLRNAADYRLPTFGPHGT
Ga0307978_11452562F002016N/AMILLVGLTTLKKERCLGIVGGCRVDPVVALRLRNAADYALPTFKPHGTKLGHS
Ga0307978_11452563F042110N/ACLGRLSGWGVDPVVALHLRNAADYRLPTFGPHGTKLGHSWFQ

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